National Heart, Lung, and Blood Institute

Epithelial Systems Biology Laboratory (ESBL)

Kidney Transcriptomic Data


RNA-Seq Analysis: Microdissected Renal Tubule Segments

Transcriptomes of All 14 Renal Tubule Segments (Mouse)
Transcriptomes of All 14 Renal Tubule Segments (Mouse): Download Data
Transcriptomes of All 14 Renal Tubule Segments (Mouse), Genome Browser View
Transcriptomes of All 14 Renal Tubule Segments (Rat)
Sex Differences in Mouse Renal Proximal Tubule Subsegments (RNA-Seq)
Circadian Variation in Mouse Renal Proximal Tubule Subsegments (RNA-Seq)

Targeted Single-Cell RNA-Seq Analysis

Transcriptomes of Collecting Duct Principal Cells and Intercalated Cells in Mouse
Transcriptomes of DCT, TAL and Macula Densa Cells in Mouse

RNA-Seq Analysis: Whole Mouse Kidney

Whole Mouse Kidney Transcriptome (RNA-Seq)
Cell Type Specific Markers in Whole Mouse Kidney (RNA-Seq)

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RNA-Seq Analysis: Mouse mpkCCD Cells

Vasopressin Effect on Transcriptome of mpkCCD Cells (RNA-Seq)
Transcriptome of mpkCCD: Time-course response to vasopressin
RNA-Seq in mpkCCD Cells: Deletion of PKA Catalytic Genes

Single Tubule RNA-Seq Analysis: Water Balance Disorders

Rat CCDs in SIADH: Vasopressin Escape (RNA-Seq)
Lithium Induced NDI: RNA-Seq in Microdissected Rat CCDs
Lithium Induced NDI: RNA-Seq in Microdissected Rat cTALs
Unilateral Ureteral Obstruction Induced Polyuria: RNA-Seq in Microdissected Rat CCDs
Unilateral Ureteral Obstruction Induced Polyuria: RNA-Seq in Microdissected Rat cTALs
LPS Induced Polyuria: RNA-Seq in Microdissected Rat CCDs

Miscellaneous Transcriptomic Data Sets

Solute Carrier (SLC) Transcript Expression along the Mouse Renal Tubule
G-Protein Coupled Receptor (GPCR) Transcript Expression along the Mouse Renal Tubule
Subsets: RNA-seq Analysis of Microdissected Rat Kidney Tubule Segments
RNA-Seq of Microdissected Glomeruli (Rat)
RNA-Seq of Microdissected Glomeruli (Mouse)
Transcriptomes of Major Proximal Tubule Cell Culture Models Used in Kidney Research
Transcriptome of Cultured OK Cells Compared with Native Mouse S1 Proximal Tubule
RNA-Seq Analysis of Shear Stress-Induced Differentiation of OK Cells in Culture
Transcriptomes of All 14 Mouse Renal Tubule Segments (Alternate site, loads slowly)

RNA-Seq of Flow-Sorted Mouse Podocytes (Kann et al.)
COPAS-Sorted DCT1 Cells (Pvalb-GFP) (de Baaij et al.)
Flow Sorted Mouse Connecting Tubule Cells: Effect of Aldosterone (Poulsen et al.)
Flow-Sorted Mouse Renal Principal Cells (Schwaderer Lab)
Flow-Sorted Mouse Renal Intercalated Cells (Schwaderer Lab)
Transcriptome of Cultured Mouse IMCD3 Cells (Igarashi Lab)

Mouse Nephron: SAGE Data (Cheval et al.)


Mouse Renal Inner Medulla: Response to Vasopressin (Brooks Lab)

Vasopressin-Regulated Transcripts in mpkCCD: SAGE (Robert-Nicoud et al.)



Subsets: RNA-seq Analysis of Microdissected Rat Kidney Tubule Segments

Legacy Affymetrix Arrays: Kidney Cells

Rat Proximal Tubule Database with BLAST

Rat Thick Ascending Limb Database with BLAST

Rat Inner Medullary Collecting Duct Database with BLAST

Mouse mpkCCD Transcriptome Database with BLAST